The Diagnostic Process: How Doctors Make Diagnoses

Diagnosis begins not with a blood test or a scan but with a conversation. Across multiple studies spanning decades, the patient’s own account of what is wrong leads to the correct diagnosis roughly 70 to 80 percent of the time, with physical examination and lab work filling in the rest. That makes the diagnostic process far more human and far less mechanical than most people assume. It also makes it vulnerable to the quirks of human thinking, from snap judgments that turn out to be brilliant to cognitive shortcuts that lead doctors astray.

Most Diagnoses Start With Listening

If you have ever felt rushed through a doctor’s appointment, the research on diagnosis should make you uneasy. One foundational study of internal medicine cases found that the patient history alone led to the correct diagnosis in about 76 percent of cases, with the physical exam adding another 12 percent and lab tests contributing the remaining 11 percent.1PubMed Central. Contributions of the history, physical examination, and laboratory investigation in making medical diagnoses A separate analysis put the history’s contribution at “at least 70%” and gave the physical exam and imaging a combined 15 percent.2Academic Medicine & Surgery. The Physical Exam–Diagnostic or Anachronistic The numbers are consistent enough to be trusted as a rough picture: what you tell your doctor matters more than anything else in the room.

Patients themselves seem to understand this intuitively. When researchers asked people to explain why physician listening mattered to them, the answers clustered around three ideas: listening is part of how the doctor gathers the clinical data needed for a diagnosis, it can itself be therapeutic, and it strengthens trust between doctor and patient.3PubMed. The importance of physician listening from the patients’ perspective: enhancing diagnosis, healing, and the doctor-patient relationship These are not separate benefits. A patient who feels heard is more likely to share the awkward detail, the timeline they are not quite sure about, or the symptom they were too embarrassed to mention upfront. Those details often turn out to be the ones that change the diagnosis.

Two Speeds of Medical Thinking

Doctors do not follow a single algorithm when they diagnose. Research over the past several decades has converged on a framework borrowed from cognitive psychology: doctors use two modes of reasoning, sometimes called System 1 and System 2. System 1 is fast, pattern-based, and largely automatic. A seasoned emergency physician sees a particular combination of chest pain, sweating, and jaw tightness and immediately thinks “heart attack” before consciously analyzing each symptom. System 2 is slower and deliberate. It involves mentally listing the possible diagnoses, weighing each one against the evidence, and systematically ruling options in or out.

After decades of sometimes contradictory studies on how doctors think, the dual-process framework has become the most widely accepted explanation. It highlights how important intuition is in clinical reasoning and how much the two modes interact rather than operating in isolation.4PubMed Central. An analysis of clinical reasoning through a recent and comprehensive approach: the dual-process theory A critical review of five decades of research on clinical reasoning found that no single theory captures the full complexity of how doctors reach diagnoses, but the dual-process model explains more of it than any predecessor.5PubMed Central. Five decades of research and theorization on clinical reasoning: a critical review

In practice, the two systems work together constantly. A doctor might recognize a pattern instantly (System 1), then slow down to verify that impression with questions and tests (System 2). Or a doctor may be methodically working through a differential diagnosis list and suddenly notice a pattern that makes the answer click. The interplay matters because errors tend to happen when one system dominates inappropriately: a snap judgment that is never checked, or an overly rigid checklist approach that misses the forest for the trees.

How Tests Actually Change the Picture

A common misconception is that diagnostic tests give you a simple yes or no. In reality, every test shifts the probability of a diagnosis rather than proving it outright. Before ordering a test, a doctor has some estimate of how likely a given condition is based on the history and exam. The test result then moves that probability up or down. This reasoning process mirrors a principle in statistics where you update your belief about how likely something is when you get new information.6PubMed. Bayes’ rule in diagnosis

This has a practical consequence that surprises many patients. When a disease is rare in the population being tested, even a highly accurate test will produce a lot of false positives. A test with 95 percent sensitivity and 95 percent specificity sounds impressive, but if only 1 in 1,000 people in the tested group actually has the disease, most positive results will still be wrong. This is why doctors do not just test for everything. Ordering a test when the probability of disease is very low reduces the test’s usefulness and raises the chance of chasing a false alarm.7PubMed Central. Diagnostic testing in psychiatry: insights and examples from a Bayesian perspective

This probability logic also explains why the same symptom might prompt a battery of tests in one patient and a reassuring “let’s watch and wait” in another. If your risk profile, history, and exam all point away from a serious condition, an aggressive workup is more likely to generate confusing false positives than to find something real.

The Incidental Findings Problem

Modern imaging technology has created a side effect that did not exist a generation ago. CT scans, MRIs, and other high-resolution images often reveal abnormalities that have nothing to do with the reason the scan was ordered. These “incidental findings” show up in roughly 15 to 30 percent of all diagnostic imaging studies, and the rate climbs to 20 to 40 percent for CT exams specifically.8PubMed. Incidental Findings and Low-Value Care

Some of these findings turn out to be genuinely important. Others are harmless abnormalities that would never have caused a problem if nobody had seen them. The challenge is telling the two apart. Many incidental findings, including some that are technically malignant, would never have affected the patient’s health if they had gone undetected. But once discovered, they trigger follow-up scans, biopsies, and anxiety. Patients who are at low risk for disease are especially prone to experiencing overdiagnosis and overtreatment that creates an illusion of benefit while actually causing harm.8PubMed. Incidental Findings and Low-Value Care

Radiologists face an uncomfortable judgment call with each incidental finding: recommend further investigation, which adds cost and risk, or suggest watching and waiting, which carries the small chance of missing something serious. There is often no outcome or cost-effectiveness data to guide the decision, and the reflexive tendency is to investigate, even when doing so promotes low-value care.9PubMed Central. Incidental findings in medical imaging This is one of the less visible costs of diagnosis: sometimes finding more does not mean knowing more.

Where Diagnosis Goes Wrong

Diagnostic errors are more common than most patients realize. A population-based estimate suggests that diagnostic errors affect at least 1 in 20 adults in the United States in outpatient settings.10PubMed Central. The frequency of diagnostic errors in outpatient care: estimations from three large observational studies involving US adult populations In hospitals, the numbers can be worse. A retrospective study of medical inpatients found that 15 percent experienced at least one diagnostic error, and among those, the error caused harm in about 83 percent of cases.11PubMed Central. Incidence, contributing factors, and predictors of diagnostic errors in medical inpatients: A retrospective cohort study Diagnostic errors also represent the largest category of high-severity medical malpractice claims and total payouts.12PubMed. Prevalence of harmful diagnostic errors in hospitalised adults: a systematic review and meta-analysis

Autopsy studies offer a sobering cross-check. A systematic review and meta-analysis pooling over 6,300 autopsies found that roughly 6.5 percent of deceased patients had a major missed diagnosis that, had it been caught, could have changed the outcome. When the definition of “missed diagnosis” was broadened to include less directly lethal discrepancies, the rate rose to about 19 percent.13PubMed. Clinical vs. autopsy diagnostic discrepancies in the intensive care unit: a systematic review and meta-analysis of autopsy series Autopsy rates have fallen dramatically over recent decades, which means this form of quality control is disappearing just when it might be most useful.14PubMed. Changes in rates of autopsy-detected diagnostic errors over time: a systematic review

Cognitive Biases That Trip Doctors Up

Most diagnostic errors are not caused by ignorance or incompetence. They stem from predictable patterns in how human minds process information under pressure. Cognitive errors have been found to contribute to about 65 percent of misdiagnoses in one analysis, with anchoring and premature closure as the most common culprits.15PubMed Central. The Misdiagnosis Tracker: Enhancing Diagnostic Reasoning Through Cognitive Bias Awareness and Error Analysis

Anchoring is the tendency to fixate on an early piece of information and interpret everything that follows through that lens. If the first thing a doctor hears is “this patient has anxiety,” every subsequent symptom risks being filtered through that label, even if the real problem is thyroid disease or a cardiac arrhythmia. Some estimates suggest cognitive biases like anchoring contribute to up to 75 percent of diagnostic errors.16PubMed. Impact of anchoring bias in medical diagnostic decision-making: an experimental study

Premature closure is closely related but subtly different. It happens when a doctor lands on a diagnosis that fits reasonably well and stops considering alternatives. A landmark study of diagnostic errors in internal medicine found that premature closure was the single most common cause of error.17JAMA Internal Medicine. Diagnostic Error in Internal Medicine The doctor was not wrong to consider the initial diagnosis; the mistake was not asking “what else could this be?” once that first explanation seemed plausible. This is a System 1 failure that System 2 is supposed to catch, and it often goes unchecked when physicians are tired, rushed, or overloaded.

Other biases play supporting roles. Availability bias leads doctors to overweight conditions they have seen recently. A physician who just treated a case of meningitis might suspect it more readily in the next patient with a headache. Confirmation bias causes selective attention to findings that support the working diagnosis while downplaying contradictory evidence. These biases are not signs of carelessness. They are features of normal human cognition that become hazardous in high-stakes environments.

Why Diagnosis Is Not a Straight Line

Patients sometimes expect diagnosis to unfold neatly: you describe symptoms, the doctor runs a test, the test gives a name to the problem. In reality, the process is often nonlinear and involves genuine uncertainty. Research on primary care encounters found that diagnostic reasoning was scattered throughout the visit rather than confined to a single moment. Doctors acknowledged uncertainty when explaining their thinking, and the six phases of a typical encounter overlapped and interleaved rather than proceeding in a tidy sequence.18PubMed Central. Anatomy of diagnosis in a clinical encounter: how clinicians discuss uncertainty with patients

Some conditions simply take time to reveal themselves. A set of vague symptoms on Monday might look completely different by Friday when a rash appears or a lab value changes. In these situations, the best diagnostic move may be to watch and wait rather than force an answer. Safety-netting, where a doctor tells you to come back if things get worse or if certain new symptoms appear, is one of the main tools for managing this kind of open-ended uncertainty. A study of how clinicians handle safety-netting found that while the practice was common, doctors varied widely in how much detail they gave patients about what symptoms to watch for and what action to take. Most told patients to return if symptoms worsened but rarely connected that advice to the explicit possibility that the initial diagnosis might be wrong.19PubMed Central. Role of communicating diagnostic uncertainty in the safety-netting process: insights from a vignette study

If your doctor says “come back if it does not improve,” that is not a brush-off. It is an acknowledgment that some diagnoses only become clear with time and that monitoring the course of an illness is itself a diagnostic tool.

When Teams Diagnose Better Than Individuals

One structural approach to reducing diagnostic error is to involve more than one brain. Multidisciplinary teams, where a case is discussed by specialists from different fields, tend to outperform solo clinicians. A study comparing individual clinicians to a consensus conference for diagnosing types of cognitive impairment found that the conference produced significantly more accurate diagnoses overall, with the advantage especially pronounced in milder and more ambiguous cases.20PubMed Central. Comparing a Single Clinician Versus a Multidisciplinary Consensus Conference Approach for Dementia Diagnostics

This is not just about having more knowledge in the room. Different specialists bring different anchors and different blind spots. A cardiologist and a pulmonologist looking at the same shortness of breath will consider different diagnoses by default. When both perspectives are weighed together, premature closure becomes harder because there is always someone in the room asking “but could it be something else?” Tumor boards in oncology, morning report in internal medicine, and radiology-pathology conferences all serve this function, even if they are not always described in those terms.

What AI Can and Cannot Do

Artificial intelligence has entered the diagnostic conversation in a serious way. A 2025 study in Nature tested an AI system called AMIE on complex diagnostic cases and found that its standalone performance exceeded that of unassisted clinicians, with a top-10 diagnostic accuracy of about 59 percent compared to 34 percent for doctors working alone. When clinicians were given AMIE as an assistant, their accuracy rose to about 52 percent, compared to 36 percent for unassisted colleagues and 44 percent for those who could only use a search engine.21Nature. Towards accurate differential diagnosis with large language models These were deliberately challenging cases, which explains why the absolute numbers look low for everyone.

A broader meta-analysis looking across multiple AI models and clinical studies found a more tempered picture. Overall, generative AI performed comparably to physicians on average, with no statistically significant difference. But expert physicians significantly outperformed the AI systems, by about 16 percentage points in diagnostic accuracy.22npj Digital Medicine. A systematic review and meta-analysis of diagnostic performance comparison between generative AI and physicians The AI tools performed on a par with non-specialist doctors, which suggests their greatest potential may be in settings where specialist access is limited.

There is a catch, though. When people work alongside automated systems, they tend to over-rely on the machine’s suggestions, a phenomenon called automation bias. Research has shown that this bias is amplified by the same pressures that already degrade diagnostic quality: high workload, time constraints, and complex cases that tax cognitive resources.23PubMed Central. Automation bias: a systematic review of frequency, effect mediators, and mitigators If a doctor is exhausted at the end of a long shift and an AI tool confidently suggests a diagnosis, the temptation to accept it without scrutiny is real. AI may solve some diagnostic problems while introducing new ones.

Can Doctors Be Trained Out of Their Biases?

Efforts to reduce cognitive bias in medicine have had mixed results. A systematic review of debiasing interventions found that fewer than half of the studied programs actually improved diagnostic accuracy. About 47 percent reported an increase in accuracy from at least one debiasing technique, while roughly 29 percent found no improvement at all. The rest showed gains in bias awareness without a measurable change in how accurately doctors diagnosed.24medRxiv. Debiasing and Educational Interventions in Medical Diagnosis: A Systematic Review

This is a genuinely discouraging finding, and the research community has been candid about it. Simply teaching doctors what anchoring bias is does not reliably stop them from anchoring. Some more promising strategies involve structured approaches: forced checklists that require considering a minimum number of alternative diagnoses, diagnostic timeouts analogous to surgical timeouts, and second-opinion systems embedded in the workflow. But the evidence base for any single intervention is thin, and the gap between knowing about a bias and avoiding it in real time is wider than anyone would like.

What You Can Do as a Patient

Patients are not passive recipients in the diagnostic process. Research on how people use online health information before a doctor visit found that patients generally present what they have found in a way that supports the relationship with their doctor rather than challenging it, and that they use it to become more involved in decision-making about their own care.25PubMed Central. A mixed methods systematic review of the effects of patient online self-diagnosing in the ‘smart-phone society’ on the healthcare professional-patient relationship and medical authority This is a constructive dynamic. Coming prepared with a written timeline of your symptoms, a list of medications, and questions about the diagnosis is not overstepping. It gives the doctor better raw material to work with.

A few specific things are worth doing. First, if you receive a diagnosis that does not feel right or does not explain all your symptoms, say so. Premature closure is the most common cause of diagnostic error, and a patient who asks “could it be something else?” is doing exactly what the best diagnostic reasoning frameworks recommend. Second, if your doctor tells you to come back if things do not improve, take that seriously and follow through. That safety-netting advice is the diagnostic process continuing, not ending. Third, ask what would change the diagnosis. If the doctor says it is likely a virus, ask what signs would suggest it is something more serious. That question forces a quick mental review of the differential and gives you specific things to watch for at home.

None of this guarantees a correct diagnosis every time. Diagnosis is, at its core, a probabilistic exercise carried out by human brains under time pressure, with imperfect information and imperfect tools. But the more both sides of the conversation bring their full attention, the better the odds tend to be.

Eric Payne

Eric Payne's work focuses on local public health programs: immunization clinics, community screening and outbreak response. Certified in Public Health by the National Board of Public Health Examiners, he earned his MPH at the University of Michigan and has spent ten years with county and state health departments. He writes about what health departments do, how vaccination campaigns are planned, and how communities track and respond to disease.