What Is the CQ Modifier and When Do You Use It?

Medical billing uses short, two-character codes known as modifiers to provide payers with additional information about a service or procedure that has been billed. These codes are necessary because the main procedure code alone may not fully describe the circumstances under which the service was performed. Modifiers clarify details like which part of the body was treated, how many providers were involved, or, in the case of the CQ modifier, the complexity level of a laboratory test. The purpose of this specialized code is to ensure accurate processing and reimbursement when certain simplified tests are performed in a non-traditional laboratory setting.

The Function and Context of the CQ Modifier

The CQ modifier stands for “Clinical Laboratory Improvement Amendments (CLIA) Waived Test.” Its purpose is to certify that a specific laboratory test meets the requirements set forth by the Clinical Laboratory Improvement Amendments of 1988 (CLIA). These federal regulations govern all laboratory testing performed on humans in the United States to ensure accuracy and reliability of results, regardless of where the test is conducted.

This modifier is applied to tests designated by the Food and Drug Administration (FDA) as posing an insignificant risk of an erroneous result. Because these tests are simple and have a low risk of error, they are designated as “waived” from the more stringent CLIA requirements applied to moderate or high-complexity tests. The CQ modifier signals to the payer that the test was performed using methodology approved for a facility holding only a Certificate of Waiver. This is particularly relevant when these simple tests are performed outside of a traditional lab, such as in a physician’s office or a clinic.

The underlying regulatory structure of CLIA compliance necessitates the use of the CQ modifier on the claim form. Without this designation, a payer might assume the test was performed under conditions that do not meet the appropriate regulatory certification level. Attaching the CQ modifier confirms that the test procedure aligns with the federal standards for waived testing. The designation protects patient safety while allowing providers to perform immediate, simple diagnostic tests at the point of care.

Specific Criteria for Use

The CQ modifier must be appended to a Healthcare Common Procedure Coding System (HCPCS) or Current Procedural Terminology (CPT) code only when the test is classified as a CLIA Waived Test. This classification means the test has been cleared by the FDA for home use or approved for waiver status based on its simplicity. Common waived tests that require this certification include specific types of blood glucose monitoring or certain dipstick urinalysis procedures.

CQ vs. QW Modifiers

The CQ modifier is specifically used by non-laboratory personnel to certify the performance of that waived test in compliance with CLIA regulations. This is a crucial distinction from the similar modifier QW, which indicates that the test is a CLIA-waived procedure. While QW identifies the test itself, the CQ modifier is utilized on the claim to confirm that the performance adhered to the regulatory standards of the Certificate of Waiver. The modifier is required even if the performing entity holds a full CLIA certificate, as it clarifies that the test was executed using the simple, waived methodology.

For example, a rapid strep test or a fecal occult blood test performed in a primary care setting requires the CQ modifier. The modifier is attached directly to the procedure code on a line-item basis to prevent claim denials and ensure proper payment. Applying this code correctly signals that the provider is authorized to perform the test under their current CLIA certification level. Omitting the CQ modifier on a waived test can lead to the claim being rejected because the payer cannot verify the compliance status of the service provided.

Documentation and Claims Processing

Accurate use of the CQ modifier is directly tied to the smooth processing of claims and reimbursement for services rendered. When a claim is submitted with the CQ modifier, the payer—such as Medicare or Medicaid—uses it as confirmation that the provider is operating under a CLIA Certificate of Waiver for that specific test. Failure to include the modifier on a claim for a waived test will result in the claim being rejected or denied upon initial submission.

Required Documentation

To justify the use of the CQ modifier, providers must maintain comprehensive documentation that can be presented upon audit. This documentation includes a copy of the facility’s current CLIA Certificate of Waiver, which must be valid for the date of service. Records should also demonstrate that the staff performing the tests have received appropriate training on the waived testing procedure and quality control protocols.

Payers conduct automated checks to match the procedure code, the CQ modifier, and the provider’s CLIA number included on the claim form. Incorrect usage, such as applying the modifier to a non-waived test or using it without the proper CLIA certification on file, can trigger an audit. If an audit reveals non-compliance, consequences can include claim denials, payment recoupment for previously paid services, and administrative penalties. Administrative staff must strictly adhere to the guidelines to ensure financial and regulatory compliance.