What Is the Carbon Source in Citrate Agar?

In microbiology, identifying bacterial species often relies on observing their distinct metabolic capabilities. The Citrate Utilization Test, typically performed using Simmons Citrate Agar, is a standard method used in laboratories. This specialized medium is formulated to determine if an organism can use a specific organic molecule as its sole carbon and energy source for growth. The resulting growth and chemical changes differentiate between closely related bacteria.

The Specific Carbon Source

The molecule that serves as the singular carbon source in this diagnostic medium is sodium citrate. Sodium citrate is the salt form of citric acid, a compound recognized for its role as an intermediate in cellular respiration. An organism must possess the necessary enzymatic machinery to break down and incorporate the carbon from sodium citrate to survive and proliferate on the slant. If a bacterium lacks this capability, it will exhibit little to no growth because it cannot harvest the energy required for basic cellular functions.

The Biochemical Requirement for Utilization

The initial hurdle for any bacterium attempting to utilize the citrate is transporting the molecule across its cell membrane. This transport function is performed by an enzyme known as citrate permease. Citrate permease is a membrane-bound carrier protein that actively moves the negatively charged citrate ions from the agar into the bacterial cytoplasm. The production of this specific transporter protein is the defining biochemical requirement for a positive result.

Once imported, the citrate molecule is processed by a second enzyme, often called citrase or citrate lyase. This enzyme cleaves citrate into smaller molecules, specifically oxaloacetate and acetate. These compounds are subsequently fed into the tricarboxylic acid (TCA) cycle, also known as the Krebs cycle, to generate metabolic energy for growth.

Interpreting the Test Results

The utilization of citrate leads to a noticeable chemical change in the medium, made visible by an included pH indicator. As the bacteria metabolize the citrate, they also process the nitrogen source, typically ammonium dihydrogen phosphate. The metabolic breakdown of this ammonium salt releases ammonia and other alkaline byproducts. This accumulation progressively increases the overall pH of the agar slant.

To visually capture this shift, the agar contains the indicator dye Bromothymol Blue. This dye is deep forest green at a neutral or slightly acidic pH (below 6.9). As metabolic activity generates ammonia and the pH rises above 7.6, the Bromothymol Blue undergoes a distinct color change. The medium transitions from green to a vibrant blue hue.

A positive result is identified by the presence of growth accompanied by this bright blue color change. If the organism cannot utilize the citrate, no significant metabolism occurs, the pH remains unchanged, and the medium retains its original green color, indicating a negative result.