What Eats Bacteria in the Ocean?

Marine bacteria are single-celled prokaryotes that form the foundation of the ocean’s biological engine. These microscopic organisms are immensely abundant throughout the water column, driving the biogeochemical cycles of carbon, nitrogen, and phosphorus on a global scale. By consuming dissolved organic matter that larger life cannot access, they recycle essential nutrients and store carbon, forming what scientists call the microbial loop. Because of their sheer numbers and rapid reproduction, these bacterial populations must be constantly regulated by various predators and agents of mortality. This regulation maintains the ocean’s productivity and ensures the flow of energy through the marine food web.

Single-Celled Organisms That Graze

The most direct and continuous consumers of marine bacteria are single-celled eukaryotes known as heterotrophic protists. These organisms are the primary grazers in the water column, acting as the bridge that transfers bacterial energy from the microbial loop to the classic food web. Many protists, such as flagellates and ciliates, actively hunt and ingest bacterial cells.

Flagellates are particularly effective hunters, often using a whip-like tail, or flagellum, to propel themselves and create water currents that draw bacteria toward their feeding groove. Ciliates, which are typically larger, use hair-like structures called cilia to create powerful currents that sweep bacteria into their mouth-like oral opening. Both groups of protists consume bacteria through a process called phagocytosis, where the cell membrane engulfs the bacterial cell whole, forming a food vacuole inside.

This predator-prey relationship is a significant control on bacterial numbers, as protists can consume thousands of bacteria per day. The protists then become food for larger zooplankton, effectively channeling the energy and carbon contained in the bacteria up the food chain.

The Controlling Power of Marine Viruses

Marine viruses exert a different, often more significant, control over bacterial populations through mortality. Bacteriophages, viruses that specifically infect bacteria, are the most abundant biological entities in the ocean, with up to ten times more viral particles than host cells in a single milliliter of seawater. These viruses are responsible for a massive daily death rate, eliminating an estimated 10 to 20 percent of all marine bacteria every day.

The primary mechanism of bacterial death is the lytic cycle, where a bacteriophage injects its genetic material into a bacterial cell. The virus hijacks the cell’s machinery to rapidly produce hundreds of new virus particles, which ultimately causes the host cell to burst, or lyse, releasing the new viruses into the water. This process instantly kills the bacteria, preventing its energy from moving up the food web to a protist predator.

The contents of the ruptured bacterial cell, including its carbon, nitrogen, and phosphorus, are released back into the water as dissolved organic matter (DOM). This phenomenon is known as the “viral shunt,” and it redirects the flow of energy away from the consumer-based food chain. The newly released DOM serves as a nutrient bath for the surviving bacteria, stimulating their growth and ensuring that the elements remain in the microbial community rather than being transferred to higher trophic levels.

How Larger Ocean Life Consumes Bacteria

Although viruses and protists are the primary regulators of bacterial numbers, bacteria are also directly consumed by larger, multicellular ocean animals, connecting the microbial world to the familiar food web. A wide array of marine invertebrates are filter feeders, organisms that pump large volumes of seawater and strain out suspended particles, including bacteria. Sponges, tunicates, and bivalves like clams and mussels are prominent examples of these non-selective feeders, and they ingest bacteria along with phytoplankton and other small organic particles.

These animals are capable of filtering immense quantities of water, allowing them to capture a substantial amount of bacterial biomass. For instance, sponges can process volumes of water equivalent to their body size every few seconds, making them effective bacterial consumers in coastal habitats. Certain types of zooplankton, such as copepods, are also considered part of this larger consumer group.

While copepods primarily feed on phytoplankton and protists, they also non-selectively ingest bacterial cells and particles coated with bacteria. The consumption of bacteria by these larger animals represents the final link in the chain, as it transfers the microbial-derived energy to organisms that are themselves consumed by fish and other larger predators. Even with this consumption, the overwhelming majority of bacterial mortality and nutrient processing remains under the control of the microscopic forces of viral lysis and protist grazing.