What Causes a Baby to Be Born With Liver Problems?

The liver is an organ responsible for hundreds of biochemical processes, including filtering toxins from the blood, regulating metabolism, and synthesizing bile for digestion. When a baby is born with a liver problem, known as congenital or neonatal liver disease, it disrupts these life-sustaining functions. This condition involves damage presenting before or shortly after birth, typically manifesting as prolonged jaundice. Neonatal liver dysfunction can quickly lead to severe complications, making early identification and understanding of the underlying cause exceptionally important.

Structural and Biliary Development Issues

Liver problems can arise from physical defects in the organ’s structure or its drainage system. The most frequent cause of liver failure in infants is Biliary Atresia, a condition where the bile ducts become scarred, blocked, or absent. This obstruction prevents bile, a digestive fluid, from flowing into the small intestine. The trapped bile backs up into the liver cells, causing inflammation, cell death, and rapid scarring known as cirrhosis.

Biliary Atresia occurs in approximately 1 in 8,000 to 18,000 newborns and requires surgical intervention, often a Kasai portoenterostomy, within the first few weeks of life to establish bile flow. Without treatment, progressive liver damage leads to liver failure by age two.

Another condition involving structural malformation is Alagille Syndrome, a multi-system genetic disorder. This syndrome is characterized by a reduced number of small bile ducts within the liver, known as bile duct paucity. It results from mutations, most commonly in the JAG1 or NOTCH2 genes, which are involved in duct development. Alagille Syndrome often presents with other findings, such as unique facial features, heart defects, and skeletal abnormalities.

Inherited Metabolic and Genetic Conditions

Neonatal liver disease often stems from inherited genetic disorders that disrupt the body’s ability to process specific substances. These conditions involve a missing or non-functional enzyme, leading to the toxic accumulation of metabolites that destroy liver cells. Since the liver is the primary site for metabolism, it is highly susceptible to these internal biochemical errors.

One frequent genetic cause is Alpha-1 Antitrypsin Deficiency (A1ATD), where a defective protein cannot be properly secreted from the liver cells. The mutated protein misfolds and accumulates in the hepatocytes, causing toxic stress that directly damages the tissue. Although A1ATD is a relatively common genetic disorder, only a minority of affected infants develop severe liver disease, typically presenting with prolonged jaundice in the first two months of life.

Other inborn errors of metabolism involve the inability to break down simple sugars, such as Galactosemia. This disorder is caused by a deficiency in the enzyme galactose-1-phosphate uridyltransferase (GALT), which is needed to convert the milk sugar galactose into glucose. When an infant consumes milk, the toxic metabolite galactose-1-phosphate builds up in the liver, leading to rapid cell damage, liver failure, and often life-threatening systemic infection if not diagnosed early.

Tyrosinemia Type I presents a similar problem with protein processing, resulting from a deficiency in the enzyme fumarylacetoacetate hydrolase (FAH). Without this functional enzyme, the amino acid tyrosine cannot be fully broken down, allowing toxic byproducts like succinylacetone to accumulate. This buildup causes acute liver failure in young infants, as well as damage to the kidneys and neurological system.

Infections Acquired Before or During Birth

The developing liver can be damaged by external pathogens acquired from the mother, either in the womb or during birth. These infections often trigger neonatal hepatitis, which involves inflammation and damage to the liver cells. The group of pathogens known by the acronym TORCH is a common cause of such acquired liver problems.

Cytomegalovirus (CMV) is noted as the most common congenital viral infection that can cause liver issues in newborns. If the mother experiences a primary CMV infection during pregnancy, the virus can cross the placenta, directly infecting and causing inflammation in the fetal liver tissue.

Hepatitis viruses, Hepatitis B (HBV) and Hepatitis C (HCV), also represent a risk, as they can be transmitted from mother to baby during birth. While many infants who acquire HBV at birth remain asymptomatic in the short term, they face a high risk of developing chronic liver infection and long-term complications.

Less Common and Multifactorial Causes

Not all neonatal liver problems fit into the categories of structural defects, inherited disorders, or acquired infections. A substantial portion of cases are initially classified as Idiopathic Neonatal Hepatitis (INH), meaning a specific cause cannot be identified despite extensive testing. In these situations, the liver shows a characteristic pattern of inflammation and cell damage, but the trigger remains unknown.

Another severe cause is Neonatal Hemochromatosis (NH), now more accurately described as Gestational Alloimmune Liver Disease (GALD). This condition is not related to the hereditary iron overload disorder seen in adults. GALD is an alloimmune disorder where the mother’s immune system produces antibodies that cross the placenta and mistakenly attack the fetal liver cells. This destructive process causes severe liver injury and secondary iron overload in the fetal tissues, often leading to liver failure shortly after birth.

Vascular anomalies can also impair liver function by disrupting the blood flow necessary to sustain liver health. Conditions like Budd-Chiari Syndrome, which involves the blockage of the veins that carry blood away from the liver, can cause blood to back up, leading to severe congestion and liver damage.