How to Do HPLC: From Sample Prep to Analysis

High-Performance Liquid Chromatography (HPLC) is an analytical method used to separate, identify, and measure components within a complex liquid mixture. The technique relies on pumping a liquid solvent, the mobile phase, at high pressure through a column packed with a solid material, the stationary phase. As the sample travels through the column, its components separate based on their differing chemical interactions with the stationary and mobile phases. This differential movement allows scientists to isolate individual compounds for precise analysis, making HPLC an indispensable tool for quality control in pharmaceuticals, environmental monitoring, and food safety.

Required System Components

The successful operation of an HPLC system depends on several interconnected hardware components that maintain precise conditions and achieve separation. The process begins at the solvent reservoir, which holds the mobile phase—a mixture of solvents like water, methanol, or acetonitrile—that carries the sample through the system. Before the mobile phase enters the pump, a degasser removes dissolved gases to prevent bubble formation, which causes erratic flow and detector noise.

The high-pressure pump draws the mobile phase from the reservoir and forces it through the system at a consistent and precisely controlled flow rate. This pump can generate pressures up to hundreds of atmospheres, which is necessary to push the liquid through the tightly packed stationary phase particles in the column. Following the pump, the injector, often an autosampler in modern systems, introduces a small, exact volume of the prepared sample into the high-pressure flow stream.

The column contains the stationary phase, typically small, porous particles of silica chemically bonded with a specific material. The stationary phase’s chemical properties, such as hydrophobicity, determine how strongly each sample component is retained, facilitating separation. After separation, the components travel into the detector, which measures a physical property, such as ultraviolet light absorption, as they exit the column. The detector converts this measurement into an electrical signal, which is sent to a computer data system to produce a chromatogram.

Method and Sample Preparation

The reliability of HPLC data is heavily influenced by careful preparation steps before analysis begins. Preparing the mobile phase involves selecting and mixing high-purity solvents, often water and an organic solvent, to create the optimal separation environment. This liquid mixture must be filtered through a small pore-size membrane, typically 0.45 µm or less, to remove particulate matter that could damage the pump or clog the column.

Degassing the mobile phase is a necessary physical step, usually accomplished by sonication, vacuum, or using the inline degasser unit, to eliminate dissolved air. Air bubbles cause system pressure fluctuations and detector noise, leading to an unstable baseline. The sample itself requires preparation to ensure system compatibility and to isolate the target compounds.

Sample preparation techniques vary widely but often involve extraction, dilution, and a final filtration step to remove matrix interferences and particulates. Solid-phase extraction (SPE) can selectively isolate target analytes, while simple dilution adjusts compound concentration to match the detector’s optimal range. The injection solvent should ideally match the mobile phase composition to avoid poor peak shape, particularly if the sample concentration is high.

Defining the method parameters in the chromatography software is the final preparatory step. This includes setting the flow rate, typically between 0.5 to 2.0 mL/min for analytical columns, and the column oven temperature, which ensures reproducible separation conditions. Analysts must choose the elution mode: isocratic elution uses a mobile phase of constant composition, while gradient elution changes the mobile phase composition over time to elute a wider range of compounds efficiently.

Executing the Separation Run

Once the mobile phase and sample are prepared and the method is programmed, the first operational step is system equilibration. The mobile phase is pumped through the column, often for 10 to 20 column volumes, until a stable baseline is achieved on the detector. A stable baseline, the detector signal when only the mobile phase is flowing, indicates that the stationary phase is conditioned and the system pressure has stabilized.

The sample injection is performed, either manually using a syringe or, more commonly, through an automated autosampler. The autosampler precisely draws the programmed volume of sample and introduces it into the flowing mobile phase stream. Throughout the run, the system pressure must be monitored to ensure it remains stable and within the operating range specified for the column.

A sudden increase in system pressure can signal a blockage, while fluctuating pressure may indicate a leak or air bubbles in the pump. The detector output is monitored to ensure the signal remains within the expected range and that the sample elutes as predicted. Modern HPLC systems automatically record the detector signal over time, generating the raw data processed into a chromatogram.

Analyzing Results and Addressing Errors

The result of an HPLC run is a chromatogram, a graphical representation plotting detector signal intensity against time. Each peak represents a separated compound, and its position on the time axis is the retention time. Compounds are identified by matching their retention time to that of a known standard analyzed under identical method conditions.

Quantification is achieved by measuring the area under each peak, as the area is directly proportional to the compound’s concentration. For accurate determination, a calibration curve is constructed by running a series of known concentrations and plotting the resulting peak areas against concentration. This curve allows the concentration of the unknown sample to be calculated reliably.

Various issues can affect chromatogram quality, making troubleshooting a routine part of the process. Poor peak shape, such as tailing or fronting, can indicate problems like column voiding, poor connections, or incompatibility between the injection solvent and the mobile phase. Tailing, where the peak slopes off slowly, is often caused by secondary interactions with the stationary phase or poor tubing connections.

Baseline drift, where the signal gradually rises or falls, may be caused by a detector lamp that has not fully warmed up or by a change in mobile phase composition during gradient elution. Unexpected “ghost peaks” in blank injections can point to mobile phase contamination or a late-eluting compound from a previous, highly concentrated injection. Addressing these errors often involves simple maintenance steps like degassing the solvent, flushing the column with a strong solvent, or ensuring all system connections are tight and leak-free.