Can You Test Negative for Chlamydia and Still Have It?

Chlamydia is a common sexually transmitted infection (STI) caused by the bacterium Chlamydia trachomatis. It is often asymptomatic, meaning many individuals have the infection without realizing it, contributing to its spread. This raises the question: can someone test negative for chlamydia and still be infected?

How Chlamydia Tests Work

The main method for detecting chlamydia is through Nucleic Acid Amplification Tests (NAATs). These sensitive tests identify the genetic material of the Chlamydia trachomatis bacterium. NAATs are preferred due to their accuracy.

Samples for NAATs are collected from infected areas. Common sample types include first-catch urine or swab samples. Swabs can be taken from sites like the cervix, vagina, urethra, rectum, or pharynx, based on sexual activity.

Reasons for an Inaccurate Negative Result

A false negative result means a person tests negative for chlamydia but is actually infected. This can happen for several reasons.

One common reason is testing too early, during the “window period.” This is the time between exposure and when the bacterial load is detectable, typically 1 to 3 weeks. If a test is performed within this window, there may not be enough genetic material for the NAAT to identify.

Another factor is improper sample collection. An insufficient or improperly collected sample might not contain enough bacterial genetic material for an accurate result. Additionally, if an infection is present in a site not tested, such as the throat or rectum, and only a genital sample is taken, the infection could be missed.

The bacterial load might also be too low for detection, especially in early or long-standing asymptomatic cases. While NAATs are highly sensitive, no diagnostic test is entirely perfect. False negative results are more common than false positives in chlamydia testing.

Interpreting Your Chlamydia Test Results

A negative chlamydia test result indicates the infection was not detected at the time of testing. This result is reliable if the test was performed correctly and outside the window period. However, consider the result alongside sexual history, recent exposures, and any symptoms.

Even with a negative result, consider any high-risk exposures. If tested too soon after exposure, the result may not be definitive. Persistent symptoms, despite a negative test, also warrant further consideration.

When to Seek Further Testing or Medical Advice

If chlamydia symptoms persist or worsen after a negative test, seek medical evaluation. These symptoms might include unusual discharge, burning during urination, or pelvic pain. A healthcare provider can assess other causes or recommend retesting.

Retesting is also recommended if the initial test was too soon after a high-risk sexual encounter (within the window period). Waiting the recommended 1 to 3 weeks post-exposure allows bacteria to multiply to detectable levels. If a sexual partner tests positive, retesting is important regardless of your previous negative result, as reinfection is possible. Consult a healthcare professional for personalized guidance on testing or treatment.