Can Crohn’s Be Missed on a Colonoscopy?

Crohn’s disease is a chronic inflammatory bowel disease (IBD) that causes inflammation anywhere along the digestive tract, from the mouth to the anus. This inflammation often targets the small and large intestines, leading to persistent abdominal pain, diarrhea, and fatigue. A colonoscopy is a primary tool for investigating these symptoms and establishing an IBD diagnosis, allowing a physician to visually inspect the lining of the colon and the final segment of the small bowel. Despite its utility, Crohn’s disease can definitively be missed on a colonoscopy due to the disease’s unique anatomical distribution and inflammatory patterns.

The Diagnostic Challenge: When Colonoscopy Fails to Detect Crohn’s

The main limitation of a standard colonoscopy is its physical reach. The colonoscope is inserted through the rectum, allowing detailed examination of the entire large intestine and the terminal ileum. Crohn’s disease can manifest further upstream in the small intestine, remaining inaccessible to the scope.

Inflammation confined to the jejunum or proximal ileum will not be visualized during a routine colonoscopy. Many active Crohn’s cases are missed because the disease is located beyond the accessible segment of the small bowel. A normal-appearing colon and terminal ileum does not exclude inflammation elsewhere in the digestive tract.

Another challenge is the characteristic pattern of inflammation known as “skip lesions.” Crohn’s disease presents as patches of diseased tissue separated by healthy segments of the bowel lining. The scope might pass through a long, unaffected section, missing an isolated patch of inflammation just beyond its view.

The inflammation can also be subtle in the early stages, making visual identification difficult. Early lesions, such as small, shallow aphthous ulcers, may be easily overlooked, especially if bowel preparation is inadequate or the inflammation is mild. A false negative result occurs when visual markers are too minimal or too far from the scope’s view.

Visualizing the Disease: Typical Crohn’s Signs on Endoscopy

When Crohn’s disease is within the scope’s reach, endoscopists look for specific visual markers. One telling sign is the presence of deep, crater-like ulcerations in the intestinal lining. These ulcers are often linear or irregular, penetrating deeper into the bowel wall than the surface inflammation seen in other forms of IBD.

A hallmark feature is “cobblestoning,” which gives the intestinal mucosa an appearance similar to a cobblestone street. This effect results from deep, interconnected ulcerations separated by swollen, non-ulcerated tissue. The patchy, discontinuous nature of the inflammation distinguishes Crohn’s from the continuous inflammation seen in ulcerative colitis.

Chronic inflammation and healing can lead to strictures, which are areas of abnormal narrowing in the bowel. Strictures are caused by thickening and scarring of the intestinal wall, often requiring therapeutic intervention. The physician may also perform a biopsy, taking tissue samples from suspicious areas to look for microscopic evidence, such as granulomas, which support a Crohn’s diagnosis.

Comprehensive Diagnosis: Imaging Beyond the Colon

If a colonoscopy is inconclusive or symptoms suggest small bowel involvement, supplementary imaging techniques are necessary to visualize inaccessible parts of the intestine. Magnetic Resonance Enterography (MRE) and Computed Tomography Enterography (CTE) are common cross-sectional imaging modalities. Both require the patient to drink a contrast solution to distend the small bowel, allowing detailed visualization of the intestinal wall and surrounding structures.

MRE is often preferred because it does not use ionizing radiation, making it safer for long-term monitoring, especially in younger patients. These methods detect inflammation extending through the entire bowel wall, known as transmural disease, and complications like strictures or fistulas. MRE and CTE provide information about inflammation severity, including bowel wall thickening and contrast enhancement, which indicate active disease.

Capsule endoscopy offers an alternative way to visualize the small bowel mucosa. This procedure involves swallowing a small, pill-sized camera that travels through the digestive tract, capturing thousands of images. Capsule endoscopy is excellent for detecting superficial mucosal lesions, such as small aphthous ulcers, that may be missed by MRE or CTE. However, it cannot be used if a severe stricture is suspected, as the capsule could become lodged and cause an obstruction.

A comprehensive diagnosis relies on combining visual evidence from endoscopy with structural and functional information from MRE or CTE, alongside clinical assessment and laboratory results. This multi-modality approach ensures that inflammation is identified wherever it is located, even when a colonoscopy appears normal.