Can a Keto Diet Cause Autoimmune Disease?

The ketogenic diet (keto) is a high-fat, very low-carbohydrate eating plan designed to shift the body into ketosis, where it burns fat for fuel instead of glucose. Autoimmune disease is a condition where the immune system mistakenly attacks the body’s own healthy tissues. Many individuals question whether the dietary changes could potentially trigger the immune system to lose its self-tolerance and initiate an autoimmune response.

What Defines Autoimmune Disease and Its Triggers

Autoimmune disease occurs due to a loss of immune tolerance, the body’s natural ability to distinguish its own cells from external threats. This failure allows self-reactive T and B lymphocytes to attack host tissues, causing damage. While genetic predisposition is a factor, the onset of disease requires environmental triggers to activate this underlying vulnerability.

Environmental factors include certain infections, chronic stress, and specific dietary elements. Highly processed foods, refined sugars, and nutrient-poor diets often contribute to systemic inflammation that can trigger autoimmune conditions. The mechanism often involves molecular mimicry, where an immune response to a foreign substance mistakenly cross-reacts with a structurally similar “self” protein.

Keto’s Impact on Systemic Inflammation

The metabolic shift to ketosis has well-documented anti-inflammatory properties. When the body breaks down fat, it produces ketone bodies, such as beta-hydroxybutyrate (BHB), which is more than just an alternative fuel source. BHB actively suppresses the activation of the NLRP3 inflammasome, a complex that triggers inflammatory responses.

By inhibiting this inflammasome, BHB reduces the production of pro-inflammatory signaling molecules like IL-1\(\beta\) and IL-18. Furthermore, a well-formulated ketogenic diet naturally eliminates refined carbohydrates and sugars, which promote chronic, low-grade inflammation. However, the anti-inflammatory effect depends on the diet’s quality, as a “dirty keto” approach high in poor-quality saturated fats and low in micronutrients may counteract these benefits.

Potential Mechanisms: Gut Health and Nutritional Deficiencies

A potential concern is the keto diet’s impact on the gut microbiome and intestinal integrity. The drastic reduction in carbohydrate intake often decreases dietary fiber, the primary food source for many beneficial gut bacteria. This lack of fermentable fiber can reduce the diversity of the gut microbiota and decrease the production of short-chain fatty acids (SCFAs), which are crucial for maintaining the health of the intestinal lining.

A compromised gut microbiome may increase the risk of intestinal permeability, often called “leaky gut.” When tight junctions between intestinal cells weaken, undigested food particles and bacterial products can enter the bloodstream, provoking an immune response and contributing to autoimmunity. Some research suggests ketone bodies may directly inhibit the growth of beneficial bacteria, such as Bifidobacterium. The diet’s restrictive nature can also lead to nutritional deficiencies if not carefully planned, impairing immune function.

Current Evidence on Keto and Autoimmune Disease Causation

Current scientific literature does not support the idea that a ketogenic diet causes autoimmune disease in healthy individuals. Most research focuses on the diet as a potential therapeutic intervention, not a causal factor. Studies, particularly in mouse models of multiple sclerosis, suggest that ketosis may attenuate disease severity and reduce inflammation. The anti-inflammatory effects of BHB are cited as a key mechanism for these observed benefits in existing conditions.

Theoretical risks related to gut health changes and nutrient intake are primarily associated with poorly balanced, long-term adherence. However, the evidence suggesting the diet can manage symptoms in conditions like rheumatoid arthritis and multiple sclerosis outweighs any direct evidence of causation. Individuals with a genetic predisposition or an existing autoimmune condition should consult a healthcare professional to ensure the diet is implemented safely.