What Is a Chromosomal Deletion and What Causes It?

Chromosomes are thread-like structures found inside the nucleus of animal and plant cells. They are composed of deoxyribonucleic acid (DNA) tightly coiled many times around proteins called histones that support its structure. These chromosomes carry all genetic information, acting like an instruction manual for the body’s development and function. A chromosomal deletion occurs when a segment of this instruction manual is missing. This can be thought of as a page or even just a few lines torn from a comprehensive guide, leading to incomplete instructions.

The Biological Basis of Chromosomal Deletions

Chromosomal deletions most frequently arise as random errors during the formation of reproductive cells (sperm and eggs) through meiosis. This process involves precise segregation of genetic material, but mistakes can occur, leading to a loss of a chromosomal segment. These new deletions are termed de novo, meaning they appear for the first time in an individual and are not inherited from either parent.

There are two primary types of chromosomal deletions. A terminal deletion occurs when the missing segment is at the very end of a chromosome arm. An interstitial deletion involves a segment lost from the middle of a chromosome. While de novo deletions are the most common cause, a deletion can be inherited if a parent carries a “balanced translocation.” In this case, the parent has a rearrangement of chromosomal material with no net loss or gain, but can pass on an unbalanced set of chromosomes to their offspring, which may include a deletion.

Syndromes Associated with Chromosomal Deletions

The health effects from a chromosomal deletion depend on the size of the deleted segment and, more importantly, which specific genes were located within that missing piece. Even small deletions can lead to significant health challenges if they involve crucial genes. Conversely, larger deletions might have less severe effects if they occur in regions with fewer functional genes.

One well-known example is Cri-du-chat syndrome, caused by a deletion on the short arm of chromosome 5 (5p deletion). The name “Cri-du-chat” is French for “cry of the cat” because affected infants often have a distinctive high-pitched cry resembling a cat’s meow, due to larynx abnormalities. Individuals with this syndrome experience developmental delays, intellectual disabilities, and characteristic facial features. Another condition is 22q11.2 deletion syndrome, also known as DiGeorge syndrome. This syndrome is caused by a deletion on chromosome 22, and its effects can be highly variable.

Individuals with 22q11.2 deletion syndrome may experience heart defects, immune system deficiencies, palate abnormalities such as a cleft palate, and distinctive facial features. They might also face developmental delays, learning difficulties, and an increased risk of certain psychiatric conditions later in life.

Diagnosis Through Genetic Testing

Chromosomal deletions can be identified through various genetic testing methods, both prenatally and postnatally. Traditional methods like karyotyping involve visualizing all 46 chromosomes under a microscope to detect large structural changes. Karyotyping identifies larger deletions visible as a missing band or segment. However, its resolution is limited, meaning it cannot detect very small deletions, often called microdeletions.

To detect smaller deletions, more advanced techniques are used. Fluorescence In Situ Hybridization (FISH) uses fluorescent probes that bind to specific DNA sequences, allowing for the detection of smaller, targeted deletions. Chromosomal Microarray Analysis (CMA) is a standard diagnostic tool due to its high resolution and ability to detect very small missing or extra pieces of chromosomal material across the entire genome. CMA can identify microdeletions too small for karyotyping or FISH, making it an effective tool for diagnosing many genetic syndromes caused by these subtle chromosomal changes.

Managing Health and Development

While a chromosomal deletion cannot be reversed or “cured,” associated symptoms and developmental challenges can be managed through comprehensive supportive care. The goal is to address specific health needs and maximize an individual’s developmental potential and quality of life. This often involves a multidisciplinary care team, bringing together various medical specialists and therapists.

Interventions commonly include physical therapy to improve gross motor skills and strength, occupational therapy to enhance fine motor skills and daily living activities, and speech therapy to support communication development. Depending on the specific syndrome, individuals may also require regular monitoring by specialists such as cardiologists for heart defects, immunologists for immune system issues, or endocrinologists for hormonal imbalances. Early intervention programs are beneficial, providing targeted support from infancy or early childhood to help children reach developmental milestones and address any learning or behavioral challenges.

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